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Transcriptomic changes following synthesis of a Populus full-sib diploid and allotriploid population with different heterozygosities driven by three types of 2n female gamete.

Identifieur interne : 001A83 ( Main/Exploration ); précédent : 001A82; suivant : 001A84

Transcriptomic changes following synthesis of a Populus full-sib diploid and allotriploid population with different heterozygosities driven by three types of 2n female gamete.

Auteurs : Shiping Cheng [République populaire de Chine] ; Jun Yang [République populaire de Chine] ; Ting Liao [République populaire de Chine] ; Xiaohu Zhu [République populaire de Chine] ; Yujing Suo [République populaire de Chine] ; Pingdong Zhang [République populaire de Chine] ; Jun Wang [République populaire de Chine] ; Xiangyang Kang [République populaire de Chine]

Source :

RBID : pubmed:26419948

Descripteurs français

English descriptors

Abstract

Diploid gametes are usually applied to produce triploids of Populus [originating from first-division restitution (FDR), second-division restitution (SDR), and postmeiotic restitution (PMR) 2n eggs]. Three types of 2n gametes transmitted different parental heterozygosities in Populus. Failed spindle formation and no chromosomal separation to opposite poles during meiosis I mean that FDR 2n gametes carry nonsister chromatids that are potentially heterozygous. By contrast, SDR 2n gametes result from failed sister chromatid separation in meiosis II, and therefore, they carry sister chromatid that are potentially homozygous. Completely homozygous 2n gametes can arise from the PMR mechanism. The alteration of gene expression resulting from allopolyploidization is a prominent feature in plants. We compared gene expression in the full-sib progeny of three allotriploid Populus populations (triploid-F, triploid-S, and triploid-P) with that in its parent species, and their full-sib diploid F1 hybrid. Genome-wide expression level dominance was biased toward the maternal in the diploid F1 hybrid and three allotriploid populations, whereas our data indicated important, but different, effects of the transmission of different heterozygosity by 2n female gametes in the expression patterns of allopolyploids. Because of the higher level of heterozygosity, the triploids had higher rates of non-additive and transgressive expression patterns in the triploid-F than in triploid-S and triploid-P. Compared with diploid F1, about 30-fold more genes (251) were differently expressed in the triploid-F than in the triploid-S (9) and triploid-P (8), respectively. These findings indicate that hybridization and polyploidization have immediate and distinct effects on the large-scale patterns of gene expression, and different effects on the transmission of heterozygosity by three 2n female gametes.

DOI: 10.1007/s11103-015-0384-0
PubMed: 26419948


Affiliations:


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Le document en format XML

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<name sortKey="Zhang, Pingdong" sort="Zhang, Pingdong" uniqKey="Zhang P" first="Pingdong" last="Zhang">Pingdong Zhang</name>
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<name sortKey="Wang, Jun" sort="Wang, Jun" uniqKey="Wang J" first="Jun" last="Wang">Jun Wang</name>
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<wicri:noRegion>100083</wicri:noRegion>
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<name sortKey="Kang, Xiangyang" sort="Kang, Xiangyang" uniqKey="Kang X" first="Xiangyang" last="Kang">Xiangyang Kang</name>
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<term>Chromosomes, Plant (genetics)</term>
<term>Crosses, Genetic (MeSH)</term>
<term>Diploidy (MeSH)</term>
<term>Gene Expression (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Germ Cells (MeSH)</term>
<term>Heterozygote (MeSH)</term>
<term>Hybrid Vigor (genetics)</term>
<term>Hybridization, Genetic (MeSH)</term>
<term>Meiosis (genetics)</term>
<term>Populus (genetics)</term>
<term>RNA, Plant (genetics)</term>
<term>Transcriptome (MeSH)</term>
<term>Triploidy (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ARN des plantes (génétique)</term>
<term>Cellules germinales (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Croisements génétiques (MeSH)</term>
<term>Diploïdie (MeSH)</term>
<term>Expression des gènes (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Hybridation génétique (MeSH)</term>
<term>Hétérozygote (MeSH)</term>
<term>Méiose (génétique)</term>
<term>Populus (génétique)</term>
<term>Transcriptome (MeSH)</term>
<term>Triploïdie (MeSH)</term>
<term>Vigueur hybride (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>RNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Chromosomes, Plant</term>
<term>Hybrid Vigor</term>
<term>Meiosis</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ARN des plantes</term>
<term>Chromosomes de plante</term>
<term>Méiose</term>
<term>Populus</term>
<term>Vigueur hybride</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Crosses, Genetic</term>
<term>Diploidy</term>
<term>Gene Expression</term>
<term>Genome, Plant</term>
<term>Germ Cells</term>
<term>Heterozygote</term>
<term>Hybridization, Genetic</term>
<term>Transcriptome</term>
<term>Triploidy</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Cellules germinales</term>
<term>Croisements génétiques</term>
<term>Diploïdie</term>
<term>Expression des gènes</term>
<term>Génome végétal</term>
<term>Hybridation génétique</term>
<term>Hétérozygote</term>
<term>Transcriptome</term>
<term>Triploïdie</term>
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<div type="abstract" xml:lang="en">Diploid gametes are usually applied to produce triploids of Populus [originating from first-division restitution (FDR), second-division restitution (SDR), and postmeiotic restitution (PMR) 2n eggs]. Three types of 2n gametes transmitted different parental heterozygosities in Populus. Failed spindle formation and no chromosomal separation to opposite poles during meiosis I mean that FDR 2n gametes carry nonsister chromatids that are potentially heterozygous. By contrast, SDR 2n gametes result from failed sister chromatid separation in meiosis II, and therefore, they carry sister chromatid that are potentially homozygous. Completely homozygous 2n gametes can arise from the PMR mechanism. The alteration of gene expression resulting from allopolyploidization is a prominent feature in plants. We compared gene expression in the full-sib progeny of three allotriploid Populus populations (triploid-F, triploid-S, and triploid-P) with that in its parent species, and their full-sib diploid F1 hybrid. Genome-wide expression level dominance was biased toward the maternal in the diploid F1 hybrid and three allotriploid populations, whereas our data indicated important, but different, effects of the transmission of different heterozygosity by 2n female gametes in the expression patterns of allopolyploids. Because of the higher level of heterozygosity, the triploids had higher rates of non-additive and transgressive expression patterns in the triploid-F than in triploid-S and triploid-P. Compared with diploid F1, about 30-fold more genes (251) were differently expressed in the triploid-F than in the triploid-S (9) and triploid-P (8), respectively. These findings indicate that hybridization and polyploidization have immediate and distinct effects on the large-scale patterns of gene expression, and different effects on the transmission of heterozygosity by three 2n female gametes. </div>
</front>
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<DateCompleted>
<Year>2016</Year>
<Month>04</Month>
<Day>21</Day>
</DateCompleted>
<DateRevised>
<Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
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<ISSN IssnType="Electronic">1573-5028</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>89</Volume>
<Issue>4-5</Issue>
<PubDate>
<Year>2015</Year>
<Month>Nov</Month>
</PubDate>
</JournalIssue>
<Title>Plant molecular biology</Title>
<ISOAbbreviation>Plant Mol Biol</ISOAbbreviation>
</Journal>
<ArticleTitle>Transcriptomic changes following synthesis of a Populus full-sib diploid and allotriploid population with different heterozygosities driven by three types of 2n female gamete.</ArticleTitle>
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<MedlinePgn>493-510</MedlinePgn>
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<AbstractText>Diploid gametes are usually applied to produce triploids of Populus [originating from first-division restitution (FDR), second-division restitution (SDR), and postmeiotic restitution (PMR) 2n eggs]. Three types of 2n gametes transmitted different parental heterozygosities in Populus. Failed spindle formation and no chromosomal separation to opposite poles during meiosis I mean that FDR 2n gametes carry nonsister chromatids that are potentially heterozygous. By contrast, SDR 2n gametes result from failed sister chromatid separation in meiosis II, and therefore, they carry sister chromatid that are potentially homozygous. Completely homozygous 2n gametes can arise from the PMR mechanism. The alteration of gene expression resulting from allopolyploidization is a prominent feature in plants. We compared gene expression in the full-sib progeny of three allotriploid Populus populations (triploid-F, triploid-S, and triploid-P) with that in its parent species, and their full-sib diploid F1 hybrid. Genome-wide expression level dominance was biased toward the maternal in the diploid F1 hybrid and three allotriploid populations, whereas our data indicated important, but different, effects of the transmission of different heterozygosity by 2n female gametes in the expression patterns of allopolyploids. Because of the higher level of heterozygosity, the triploids had higher rates of non-additive and transgressive expression patterns in the triploid-F than in triploid-S and triploid-P. Compared with diploid F1, about 30-fold more genes (251) were differently expressed in the triploid-F than in the triploid-S (9) and triploid-P (8), respectively. These findings indicate that hybridization and polyploidization have immediate and distinct effects on the large-scale patterns of gene expression, and different effects on the transmission of heterozygosity by three 2n female gametes. </AbstractText>
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<ForeName>Shiping</ForeName>
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<Affiliation>National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083, People's Republic of China.</Affiliation>
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<AffiliationInfo>
<Affiliation>Pingdingshan University, Pingdingshan, 467000, Henan Province, People's Republic of China.</Affiliation>
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<LastName>Yang</LastName>
<ForeName>Jun</ForeName>
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<Affiliation>National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083, People's Republic of China.</Affiliation>
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<LastName>Liao</LastName>
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<AffiliationInfo>
<Affiliation>College of Forestry and Horticulture, Xinjiang Agricultural University, No. 311, East Nongda Road, Urumqi, 830052, People's Republic of China.</Affiliation>
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<Month>09</Month>
<Day>29</Day>
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<MeshHeading>
<DescriptorName UI="D006823" MajorTopicYN="N">Hybrid Vigor</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading>
<DescriptorName UI="D008540" MajorTopicYN="N">Meiosis</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
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<Keyword MajorTopicYN="N">Biased expression</Keyword>
<Keyword MajorTopicYN="N">Expression level dominance</Keyword>
<Keyword MajorTopicYN="N">Heterozygosity</Keyword>
<Keyword MajorTopicYN="N">Polyploidy</Keyword>
<Keyword MajorTopicYN="N">Populus</Keyword>
<Keyword MajorTopicYN="N">RNA-seq</Keyword>
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